NIPS 2016 Connectomics Workshop

December 10, 2016
Barcelona, Spain
The schedule is now posted!

Please note the date has been changed from December 9 to December 10!

Overview

The "wiring diagram" of essentially all nervous systems remain unknown due to the extreme difficulty of measuring detailed patterns of synaptic connectivity of entire neural circuits. At this point, the major bottleneck is in the analysis of tera or peta-voxel 3d electron microscopy image data in which neuronal processes need to be traced and synapses localized in order for connectivity information to be inferred. This presents an opportunity for machine learning and machine perception to have a fundamental impact on advances in neurobiology. However, it also presents a major challenge, as existing machine learning methods fall short of solving the problem.

The goal of this workshop is to bring together researchers in machine learning and neuroscience to discuss progress and remaining challenges in this exciting and rapidly growing field. We aim to attract machine learning and computer vision specialists interested in learning about a new problem, as well as computational neuroscientists at NIPS who may be interested in modeling connectivity data. We will discuss the release of public datasets and competitions that may facilitate further activity in this area. We expect the workshop to result in a significant increase in the scope of ideas and people engaged in this field.

The workshop solicits presentations on any related subjects; for example:
  • methods for reconstruction of neural connectivity from microscopy or other sources;
  • theoretical and empirical analysis of artificial and biological connectivity data;
  • applications of wiring diagram data to novel engineering or scientific applications.

Schedule

  • 08:30 Opening Remarks: Viren Jain
  • 08:40 Keynote: Terry Sejnowski (Salk Institute)
  • 09:00 Nir Shavit (MIT)
  • 09:20 Shibani Santurkar (MIT)
  • 09:30 David Rolnick (MIT)
  • 09:40 Moritz Helmstadter (MPI Brain Research)
  • 10:00 Benedikt Staffler (MPI Brain Research)
  • 10:10 Emmanuel Klinger (MPI Brain Research)
  • 10:20 Alessandro Motta (MPI Brain Research)
  • 10:30-11:00 Coffee break + Posters
  • 11:00 Fred Hamprecht (U Heidelberg)
  • 11:20 Andrew Warrington (Oxford)
  • 11:30 Anima Anandkumar (UC Irvine)
  • 11:50 Nils Eckstein (Institute of Neuroinformatics)
  • 12:00 Renate Krause (Institute of Neuroinformatics)
  • 12:10 Thanuja Ambegoda (Institute of Neuroinformatics)
  • 12:20 Julia Buhmann (Institute of Neuroinformatics)
    12:30-14:00 Lunch
  • 14:00 Jörgen Kornfeld (MPI Neurobiology)
  • 14:10 Marius Killinger (MPI Neurobiology)
  • 14:20 Sven Dorkenwald (MPI Neurobiology)
  • 14:30 Philipp Schubert (MPI Neurobiology)
  • 14:40 Jeremy Maitin-Shepard (Google)
  • 14:50 Michał Januszewski (Google)
    15:00-15:30 Coffee break + Posters
  • 15:30 Konrad Koerding (Northwestern)
  • 15:50 Eva Dyer (Northwestern)
  • 16:00 Uygar Sümbül (Columbia)
  • 16:10 Daniel Goodwin (MIT)
  • 16:20 Manish Saggar (Stanford)
  • 16:30 Jan Funke (UPC Barcelona)
  • 16:50 Scott Linderman (Columbia U)
  • 17:10 Srini Turaga (HHMI Janelia Research Campus)
  • 17:20 Franco Coltraro (CSIC-UPC Barcelona)
  • 17:30 Marta Sales (Universitat Rovira i Virgili)
  • 17:50 Dan Roy (U Toronto)
  • 18:10 Closing
  • Submission Information

    Submissions will be considered both for poster and oral presentations. Note that the workshop will not be publishing any proceedings.

    To be considered for inclusion in the program, please email an abstract in any format to the following address: nips2016connectomics@googlegroups.com.

    If there are related papers on arXiv or elsewhere, please include links to the material.

    Please submit material by November 1, 2016, for full consideration.

    Dates and Information

    • Date: December 10 (changed from Dec 9!), 2016
    • Location: Barcelona, Spain
    • Registration: NIPS
    Organizers:
  • Viren Jain is a Research Scientist at Google in Mountain View, California where he is currently the technical lead of a team pursuing advances in high-throughput, synaptic-resolution brain mapping. Prior to Google, Viren was a Laboratory Head at the Howard Hughes Medical Institute (HHMI) Janelia Research Campus. Viren holds a PhD in Computation from MIT and undergraduate degrees in Computer Science and Cognitive Science from the University of Pennsylvania.
  • Srini Turaga is a Group Leader at the Howard Hughes Medical Institute/Janelia Research Campus. His research involves developing machine learning algorithms for automating the reconstruction of neural circuits from electron microscopy, and building statistical models of neural activity and connectivity.